A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Mouse fecal and cecal samples, Control vs. 4 kinds of antibiotics |
| Study design | Cross-Sectional |
| Topic area | Antibiotics |
| Attributes | Abx: Control, Penicillin, Chlortetracycline, Vancomycin, VancomycinPenicillin Source: cecal, fecal |
| Dataset notes | Two sample types available |
| Number of samples | 95 |
| Number of subjects | 47 |
| Other Details | |
|---|---|
| 16s hypervariable region | V3 |
| Targeted amplicon size | 177 |
| Sequencing technology | 454 |
| Fraction of sequences mapped to database | |
| Processed sequences | cho2012.fasta.gz |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://www.ncbi.nlm.nih.gov/bioproject/168618 |
| Literature source | http://www.ncbi.nlm.nih.gov/pubmed/22914093 |