A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Plant-based vs. Animal-based diet, Cross-over study |
| Study design | Longitudinal |
| Topic area | Diet |
| Attributes | Diet: Plant, Animal Day: -4 to -1 (baseline), 0 to 4 (diet), 5 to 10 (washout) |
| Dataset notes | Longitudinal data available, but subset by last day of intervention to compare groups |
| Number of samples | 235 |
| Number of subjects | 11 |
| Other Details | |
|---|---|
| 16s hypervariable region | V4 |
| Targeted amplicon size | 282 |
| Sequencing technology | Illumina MiSeq |
| Fraction of sequences mapped to database | |
| Processed sequences | david2014.fasta.gz |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://www.mg-rast.org/linkin.cgi?project=mgp6248 |
| Literature source | https://www.ncbi.nlm.nih.gov/pubmed/24336217 |