A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Adjacent Healthy vs. Tumor Colon Biopsy Tissues |
| Study design | Paired |
| Topic area | Colorectal Cancer |
| Attributes | DIAGNOSIS: Healthy, Tumor |
| Dataset notes | Samples are paired per person |
| Number of samples | 190 |
| Number of subjects | 95 |
| Other Details | |
|---|---|
| 16s hypervariable region | V35 |
| Targeted amplicon size | 569 |
| Sequencing technology | 454 |
| Fraction of sequences mapped to database | |
| Processed sequences | montassier2016.fasta.gz |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP000383 |
| Literature source | https://www.ncbi.nlm.nih.gov/pubmed/22009990 |