A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Healthy, Crohn’s Disease, or Ulcerative Colitis patients |
| Study design | Cross-Sectional |
| Topic area | IBD |
| Attributes | ULCERATIVE_COLIT_OR_CROHNS_DIS: Crohn’s disease, Healthy, Ulcerative Colitis BODY_SITE: UBERON:ileal mucosa, UBERON:feces, UBERON:mucosa of descending colon |
| Dataset notes | Cross-sectional study with different subjects for all sample types |
| Number of samples | 231 |
| Number of subjects | 231 |
| Other Details | |
|---|---|
| 16s hypervariable region | V35 |
| Targeted amplicon size | 569 |
| Sequencing technology | 454 |
| Fraction of sequences mapped to database | |
| Processed sequences | morgan2012.fasta.gz |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://www.ncbi.nlm.nih.gov/bioproject/82111 |
| Literature source | https://www.ncbi.nlm.nih.gov/pubmed/23013615 |